{"id":39557,"date":"2020-03-25T17:00:40","date_gmt":"2020-03-25T16:00:40","guid":{"rendered":"https:\/\/www.cde.ual.es\/?p=39557"},"modified":"2020-03-25T09:30:55","modified_gmt":"2020-03-25T08:30:55","slug":"covid-19-how-unprecedented-data-sharing-has-led-to-faster-than-ever-outbreak-research","status":"publish","type":"post","link":"https:\/\/www.cde.ual.es\/en\/covid-19-how-unprecedented-data-sharing-has-led-to-faster-than-ever-outbreak-research\/","title":{"rendered":"Covid-19: How unprecedented data sharing has led to faster-than-ever outbreak research"},"content":{"rendered":"<p>Advances in <strong>gene sequencing have allowed scientists to trace and monitor the COVID-19 pandemic<\/strong> faster than any previous outbreak.<\/p>\n<p><a href=\"https:\/\/www.cde.ual.es\/wp-content\/uploads\/2020\/03\/Coronavirus.png\"><img decoding=\"async\" class=\"size-medium wp-image-38005 aligncenter\" src=\"https:\/\/www.cde.ual.es\/wp-content\/uploads\/2020\/03\/Coronavirus-300x175.png\" alt=\"\" width=\"300\" height=\"175\" srcset=\"https:\/\/www.cde.ual.es\/wp-content\/uploads\/2020\/03\/Coronavirus-300x175.png 300w, https:\/\/www.cde.ual.es\/wp-content\/uploads\/2020\/03\/Coronavirus-768x447.png 768w, https:\/\/www.cde.ual.es\/wp-content\/uploads\/2020\/03\/Coronavirus.png 895w\" sizes=\"(max-width: 300px) 100vw, 300px\" \/><\/a><\/p>\n<p>When the new coronavirus (formally known as SARS-CoV-2) was identified in China in January, scientists around the world were ready to respond. The virus\u2019s entire genetic makeup, or genome, was published\u00a0<a href=\"https:\/\/www.thelancet.com\/journals\/lancet\/article\/PIIS0140-6736(20)30251-8\/fulltext\" target=\"_blank\" rel=\"noopener noreferrer\">online<\/a>\u00a0within days. By comparison, during the SARS coronavirus outbreak in 2003, this took almost three months, after the disease was\u00a0<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC1550436\/\" target=\"_blank\" rel=\"noopener noreferrer\">originally blamed on chlamydia<\/a>.<\/p>\n<p>Advances in the technology have brought down the cost of gene sequencing significantly and the machines are now small enough to fit in the palm of your hand. This has made it easier for a large number of samples to be sequenced around the world.<\/p>\n<p class=\"selectionShareable\">Next-generation sequencing, or NGS, can generate enormous amounts of data, and the challenge becomes finding ways to analyse it properly.<\/p>\n<p class=\"selectionShareable\">In 2015, Prof. Vandamme led a european project called <a href=\"https:\/\/cordis.europa.eu\/project\/id\/634650\/en\" target=\"_blank\" rel=\"noopener noreferrer\">VIROGENESIS\u00a0<\/a>to develop new tools to help analyse and interpret the data that comes from sequencing, particularly for laboratories that were not used to dealing with sophisticated genetic analysis.<\/p>\n<p>One of the tools developed, called\u00a0<a href=\"https:\/\/www.genomedetective.com\/\" target=\"_blank\" rel=\"noopener noreferrer\">Genome Detective<\/a>, can take the raw data from the sequencing machine, filter out results from non-viruses, piece together the genome and use that to identify the virus. It does not rely on any prior guesses or hypotheses, so it can even identify viruses that have not been seen before. This was used to confirm the first case of COVID-19 in Belgium, identifying it as a SARS-related coronavirus.<\/p>\n<h3 class=\"selectionShareable\">Online sharing<\/h3>\n<p class=\"selectionShareable\">The power of gene sequencing comes from comparing the results across different cases. Prof. Vandamme says that it has been \u2018fantastic\u2019 to see the level of collaboration internationally: \u2018There is a lot more online sharing of data and sequences compared to the past because we have a lot more online sharing tools available.\u2019<\/p>\n<p class=\"selectionShareable\">One of these tools is\u00a0<a href=\"https:\/\/nextstrain.org\/\" target=\"_blank\" rel=\"noopener noreferrer\">NextStrain<\/a>, an online resource that uses genome data to monitor the evolution of disease-causing organisms such as viruses in real time. It has tracked several outbreaks including Zika, Ebola and Dengue and has even been used to inform World Health Organization policy on seasonal flu.<\/p>\n<h3 class=\"selectionShareable\">Genetic blueprint<\/h3>\n<p class=\"selectionShareable\">Despite the genetic blueprint of the new coronavirus being readily available, it still does not tell us very much about how it differs from other coronaviruses. Much of what we know has come from seeing how it has spread through the population. It is now clear how different it is to previous coronavirus outbreaks, such as SARS and MERS.<\/p>\n<h3>More information<\/h3>\n<p><a href=\"https:\/\/horizon-magazine.eu\/article\/covid-19-how-unprecedented-data-sharing-has-led-faster-ever-outbreak-research.html\">Complete news<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Advances in gene sequencing have allowed scientists to trace and monitor the COVID-19 pandemic faster than any previous outbreak. When the new coronavirus (formally known as SARS-CoV-2) was identified in China in January, scientists around the world were ready to respond. The virus\u2019s entire genetic makeup, or genome, was published\u00a0online\u00a0within days. By comparison, during the [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":38005,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_acf_changed":false,"_relevanssi_hide_post":"","_relevanssi_hide_content":"","_relevanssi_pin_for_all":"","_relevanssi_pin_keywords":"","_relevanssi_unpin_keywords":"","_relevanssi_related_keywords":"","_relevanssi_related_include_ids":"","_relevanssi_related_exclude_ids":"","_relevanssi_related_no_append":"","_relevanssi_related_not_related":"","_relevanssi_related_posts":"","_relevanssi_noindex_reason":"","_monsterinsights_skip_tracking":false,"_monsterinsights_sitenote_active":false,"_monsterinsights_sitenote_note":"","_monsterinsights_sitenote_category":0,"_genesis_hide_title":false,"_genesis_hide_breadcrumbs":false,"_genesis_hide_singular_image":false,"_genesis_hide_footer_widgets":false,"_genesis_custom_body_class":"","_genesis_custom_post_class":"","_genesis_layout":"","footnotes":""},"categories":[346],"tags":[1352,350,433],"class_list":{"0":"post-39557","1":"post","2":"type-post","3":"status-publish","4":"format-standard","5":"has-post-thumbnail","7":"category-eu-news","8":"tag-covid-19","9":"tag-investigacion-en","10":"tag-research","11":"entry"},"acf":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v27.5 - https:\/\/yoast.com\/product\/yoast-seo-wordpress\/ -->\n<title>Covid-19: How unprecedented data sharing has led to faster-than-ever outbreak research | CDE Almer\u00eda - Centro de Documentaci\u00f3n Europea - Universidad de Almer\u00eda<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/www.cde.ual.es\/en\/covid-19-how-unprecedented-data-sharing-has-led-to-faster-than-ever-outbreak-research\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Covid-19: How unprecedented data sharing has led to faster-than-ever outbreak research | CDE Almer\u00eda - Centro de Documentaci\u00f3n Europea - Universidad de Almer\u00eda\" \/>\n<meta property=\"og:description\" content=\"Advances in gene sequencing have allowed scientists to trace and monitor the COVID-19 pandemic faster than any previous outbreak. When the new coronavirus (formally known as SARS-CoV-2) was identified in China in January, scientists around the world were ready to respond. The virus\u2019s entire genetic makeup, or genome, was published\u00a0online\u00a0within days. By comparison, during the [&hellip;]\" \/>\n<meta property=\"og:url\" content=\"https:\/\/www.cde.ual.es\/en\/covid-19-how-unprecedented-data-sharing-has-led-to-faster-than-ever-outbreak-research\/\" \/>\n<meta property=\"og:site_name\" content=\"CDE Almer\u00eda - Centro de Documentaci\u00f3n Europea - Universidad de Almer\u00eda\" \/>\n<meta property=\"article:publisher\" content=\"https:\/\/www.facebook.com\/cdeuniversidadalmeria\/\" \/>\n<meta property=\"article:published_time\" content=\"2020-03-25T16:00:40+00:00\" \/>\n<meta property=\"og:image\" content=\"https:\/\/www.cde.ual.es\/wp-content\/uploads\/2020\/03\/Coronavirus.png\" \/>\n\t<meta property=\"og:image:width\" content=\"895\" \/>\n\t<meta property=\"og:image:height\" content=\"521\" \/>\n\t<meta property=\"og:image:type\" content=\"image\/png\" \/>\n<meta name=\"author\" content=\"AdminCDE\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<meta name=\"twitter:creator\" content=\"@cdeualmeria\" \/>\n<meta name=\"twitter:site\" content=\"@cdeualmeria\" \/>\n<meta name=\"twitter:label1\" content=\"Written by\" \/>\n\t<meta name=\"twitter:data1\" content=\"AdminCDE\" \/>\n\t<meta name=\"twitter:label2\" content=\"Est. reading time\" \/>\n\t<meta name=\"twitter:data2\" content=\"2 minutes\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\\\/\\\/schema.org\",\"@graph\":[{\"@type\":\"Article\",\"@id\":\"https:\\\/\\\/www.cde.ual.es\\\/en\\\/covid-19-how-unprecedented-data-sharing-has-led-to-faster-than-ever-outbreak-research\\\/#article\",\"isPartOf\":{\"@id\":\"https:\\\/\\\/www.cde.ual.es\\\/en\\\/covid-19-how-unprecedented-data-sharing-has-led-to-faster-than-ever-outbreak-research\\\/\"},\"author\":{\"name\":\"AdminCDE\",\"@id\":\"https:\\\/\\\/www.cde.ual.es\\\/#\\\/schema\\\/person\\\/224ef08c8bcc005f319d2713ce37ee5f\"},\"headline\":\"Covid-19: How unprecedented data sharing has led to faster-than-ever outbreak research\",\"datePublished\":\"2020-03-25T16:00:40+00:00\",\"mainEntityOfPage\":{\"@id\":\"https:\\\/\\\/www.cde.ual.es\\\/en\\\/covid-19-how-unprecedented-data-sharing-has-led-to-faster-than-ever-outbreak-research\\\/\"},\"wordCount\":431,\"commentCount\":0,\"publisher\":{\"@id\":\"https:\\\/\\\/www.cde.ual.es\\\/#organization\"},\"image\":{\"@id\":\"https:\\\/\\\/www.cde.ual.es\\\/en\\\/covid-19-how-unprecedented-data-sharing-has-led-to-faster-than-ever-outbreak-research\\\/#primaryimage\"},\"thumbnailUrl\":\"https:\\\/\\\/www.cde.ual.es\\\/wp-content\\\/uploads\\\/2020\\\/03\\\/Coronavirus.png\",\"keywords\":[\"covid-19\",\"Investigaci\u00f3n\",\"Research\"],\"articleSection\":[\"EU News\"],\"inLanguage\":\"en-US\",\"potentialAction\":[{\"@type\":\"CommentAction\",\"name\":\"Comment\",\"target\":[\"https:\\\/\\\/www.cde.ual.es\\\/en\\\/covid-19-how-unprecedented-data-sharing-has-led-to-faster-than-ever-outbreak-research\\\/#respond\"]}]},{\"@type\":\"WebPage\",\"@id\":\"https:\\\/\\\/www.cde.ual.es\\\/en\\\/covid-19-how-unprecedented-data-sharing-has-led-to-faster-than-ever-outbreak-research\\\/\",\"url\":\"https:\\\/\\\/www.cde.ual.es\\\/en\\\/covid-19-how-unprecedented-data-sharing-has-led-to-faster-than-ever-outbreak-research\\\/\",\"name\":\"Covid-19: How unprecedented data sharing has led to faster-than-ever outbreak research | CDE Almer\u00eda - 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